PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00274g00839.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 252aa    MW: 27945.8 Da    PI: 9.3921
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00274g00839.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.9e-082649326
                              S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                              ++lC  f r G C+yG +C++aH+
  Peaxi162Scf00274g00839.1 26 QPLCIQFKRWGNCSYGHNCRYAHV 49
                              68*********************7 PP

2zf-CCCH39.59.2e-13143168227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               kt+lC  + r+G CkyG+ C+FaHg+
  Peaxi162Scf00274g00839.1 143 KTRLCIQWERSGSCKYGSYCHFAHGK 168
                               8***********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00732450IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0892451IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-52749IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-52751IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-62848IPR000571Zinc finger, CCCH-type
SMARTSM003560.0246996IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-66998IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-67095IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9767097IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-8140169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-12140168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507141169IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-10143168IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-4143168IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVSTSSRMGL EEDKRSNGSI MNHSPQPLCI QFKRWGNCSY GHNCRYAHVT NTGPNWKGHG  60
GFEEDQRNVC KMKPCYFYLS GKGCPYGNKC IYLHEYDQKV EGGSTVICRE NSAISVGISG  120
KQVRNMTSIE PKRCVDLSKK FVKTRLCIQW ERSGSCKYGS YCHFAHGKAG ISTVISSIFL  180
KSPGSSNPLK SLSSGGISAP AKSAEPDKTG FSALSKGRFL FKWTNIHKNS EIYGDWIEKV  240
QLVPLSSNTV ED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620360.13e-81PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1
RefseqXP_016459038.13e-81PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130261320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.16e-22C3H family protein