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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00274g00839.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C3H | ||||||||
Protein Properties | Length: 252aa MW: 27945.8 Da PI: 9.3921 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.8 | 7.9e-08 | 26 | 49 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++lC f r G C+yG +C++aH+ Peaxi162Scf00274g00839.1 26 QPLCIQFKRWGNCSYGHNCRYAHV 49 68*********************7 PP | |||||||
2 | zf-CCCH | 39.5 | 9.2e-13 | 143 | 168 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC + r+G CkyG+ C+FaHg+ Peaxi162Scf00274g00839.1 143 KTRLCIQWERSGSCKYGSYCHFAHGK 168 8***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0073 | 24 | 50 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.089 | 24 | 51 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-5 | 27 | 49 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.07E-5 | 27 | 51 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.4E-6 | 28 | 48 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.024 | 69 | 96 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 69 | 98 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.6E-6 | 70 | 95 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.976 | 70 | 97 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-8 | 140 | 169 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.9E-12 | 140 | 168 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.507 | 141 | 169 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-10 | 143 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-4 | 143 | 168 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MVSTSSRMGL EEDKRSNGSI MNHSPQPLCI QFKRWGNCSY GHNCRYAHVT NTGPNWKGHG 60 GFEEDQRNVC KMKPCYFYLS GKGCPYGNKC IYLHEYDQKV EGGSTVICRE NSAISVGISG 120 KQVRNMTSIE PKRCVDLSKK FVKTRLCIQW ERSGSCKYGS YCHFAHGKAG ISTVISSIFL 180 KSPGSSNPLK SLSSGGISAP AKSAEPDKTG FSALSKGRFL FKWTNIHKNS EIYGDWIEKV 240 QLVPLSSNTV ED |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009620360.1 | 3e-81 | PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1 | ||||
Refseq | XP_016459038.1 | 3e-81 | PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13026 | 13 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 6e-22 | C3H family protein |